Metanephros

Lower Urinary Tract

Early Genitourinary System

Male Reproductive System

Female Reproductive System

 

 

Tissue Summary: collecting duct (TS21-TS28)


About

collecting duct description

The collecting duct, composed of ureteric epithelia, is formed by successive branching of the ureteric bud and extends from the periphery of the kidney to the inner medulla.
Nephrons are linked via renal connecting tubules to the collecting duct where the urine is collected. The urine is then drained from the collecting ducts into the pelvis, then to the bladder via the ureter.



View collecting duct in GUDMAP Development Tutorials


In Situ Data

Link to collecting duct in-situ data for TS17 Link to collecting duct in-situ data for TS18 Link to collecting duct in-situ data for TS19 Link to collecting duct in-situ data for TS20 Link to collecting duct in-situ data for TS21 Link to collecting duct in-situ data for TS22 Link to collecting duct in-situ data for TS23 Link to collecting duct in-situ data for TS24 Link to collecting duct in-situ data for TS25 Link to collecting duct in-situ data for TS26 Link to collecting duct in-situ data for TS27 Link to collecting duct in-situ data for TS28

Validated Anchor/Marker Genes

Anchors (6)

Anchor genes are defined as genes whose expression is restricted to one temporospatial anatomical compartment. These have been selected by microarray analyses followed by validation using section in-situ hybridisation.

Gene SymbolGene MGI IDAnchor OfStageAlso Marker ofGUDMAP IDReference
AI836003 MGI:2146066 medullary collecting duct (EMAPA:28061)
TS23GUDMAP:13573
Thiagarajan et al. (2011)
Clmn MGI:2136957 medullary collecting duct (EMAPA:28061)
TS23GUDMAP:13648
Thiagarajan et al. (2011)
Fam129a MGI:2137237 medullary collecting duct (EMAPA:28061)
TS23GUDMAP:11305
Thiagarajan et al. (2011)
Gsdmc4 MGI:1921798 medullary collecting duct (EMAPA:28061)
TS23GUDMAP:11309
Thiagarajan et al. (2011)
Slco4c1 MGI:2442784 ureteric tip (EMAPA:27605)
TS23GUDMAP:11316
Thiagarajan et al. (2011)
Upk3a MGI:98914 medullary collecting duct (EMAPA:28061)
TS23pelvic urothelial lining (EMAPA:28077)
GUDMAP:9904
Thiagarajan et al. (2011)

 

Markers (9)

Marker genes are defined as genes which display a regional or enriched expression pattern and may be useful in identifying one or more particular temporospatial compartment(s). These have been selected by microarray analyses followed by validation using section in-situ hybridisation.

Gene SymbolGene MGI IDMarker OfStageAlso Marker OfGUDMAP IDReference
9230110F11Rik MGI:2444007 ureteric tip (EMAPA:27605)
cortical collecting duct (EMAPA:28130)
TS23GUDMAP:11310
Thiagarajan et al. (2011)
Capg MGI:1098259 collecting duct (EMAPA:28407)
TS23pelvic urothelial lining (EMAPA:28077)
GUDMAP:13575
Thiagarajan et al. (2011)
Kitl MGI:96974 ureteric tip (EMAPA:27605)
cortical collecting duct (EMAPA:28130)
TS23GUDMAP:11312
Thiagarajan et al. (2011)
Ppp1r3c MGI:1858229 cortical collecting duct (EMAPA:28130)
medullary collecting duct (EMAPA:28061)
TS23GUDMAP:11318
Thiagarajan et al. (2011)
Scnn1b MGI:104696 collecting duct (EMAPA:28407)
TS23early distal tubule (EMAPA:28007)
GUDMAP:11303
Thiagarajan et al. (2011)
Sox9 MGI:98371 ureteric tip (EMAPA:27605)
TS23cortical renal tubule (EMAPA:18976)
renal vesicle (EMAPA:27678)
s-shaped body (EMAPA:27756)
GUDMAP:20765
Thiagarajan et al. (2011)
Tesc MGI:1930803 collecting duct (EMAPA:28407)
TS23cortical renal tubule (EMAPA:18976)
GUDMAP:11297
Thiagarajan et al. (2011)
Upk1b MGI:98912 medullary collecting duct (EMAPA:28061)
TS23GUDMAP:13577
Thiagarajan et al. (2011)
Vldlr MGI:98935 collecting duct (EMAPA:28407)
TS23GUDMAP:11314
Thiagarajan et al. (2011)

 

 

Genelists


Published Genelists

Published genelists from Microarray Analysis. Click on the number of probes to go to heatmap view


List NameDescription EntitiesGenesSubmitted ByRefs
UQ Ureteric Tip E15.5Anchor genes specific to key renal compartments: Ureteric Tip E15.514 probesets12Kylie Georgas, Rathi ThiagarajanThiagarajan et al. (2011)
Ureteric Tip Region 15.5dpcBrunskill et al.: Ureteric Tip Region 15.5dpc540 probesets417Bruce Aronow, Eric BrunskillBrunskill et al. (2008)
K-means clustered - all from Brunskill et al. (2008)Brunskill et al.: All k-means clustered probesets7599 probesets4757Bruce Aronow, Eric BrunskillBrunskill et al. (2008)
UQ Cortical Collecting Duct E15.5Anchor genes specific to key renal compartments: Cortical Collecting Duct E15.57 probesets4Kylie Georgas, Rathi ThiagarajanThiagarajan et al. (2011)
UQ Medullary Collecting Duct E15.5Anchor genes specific to key renal compartments: Medullary Collecting Duct E15.516 probesets15Kylie Georgas, Rathi ThiagarajanThiagarajan et al. (2011)
Medullary Collecting Duct 15.5dpcBrunskill et al.: Ureteric Tip Region 15.5dpc411 probesets303Bruce Aronow, Eric BrunskillBrunskill et al. (2008)
Ureteric Bud 11.5dpcBrunskill et al.: Ureteric Bud 11.5dpc667 probesets555Bruce Aronow, Eric BrunskillBrunskill et al. (2008)

 



Non-Published Genelists

Non-published genelists from Microarray Analysis. Click on the list name or number of probes to go to heatmap view. Microarray Analysis Help.


List NameDescription EntitiesGenesSubmitted ByRefs
DevelopingKidney_e15.5_cortic collect duct_emap-28132_100100 probesets89Bruce Aronow
DevelopingKidney_e15.5_cortic collect duct_emap-28132_10001000 probesets829Bruce Aronow
DevelopingKidney_e15.5_cortic collect duct_emap-28132_200200 probesets169Bruce Aronow
DevelopingKidney_e15.5_cortic collect duct_emap-28132_500500 probesets420Bruce Aronow
DevelopingKidney_e15.5_cortic collect duct_emap-28132_k1_10013 probesets12Bruce Aronow
DevelopingKidney_e15.5_cortic collect duct_emap-28132_k1_100073 probesets64Bruce Aronow
DevelopingKidney_e15.5_cortic collect duct_emap-28132_k1_20070 probesets60Bruce Aronow
DevelopingKidney_e15.5_cortic collect duct_emap-28132_k1_50071 probesets60Bruce Aronow
DevelopingKidney_e15.5_cortic collect duct_emap-28132_k2_10016 probesets13Bruce Aronow
DevelopingKidney_e15.5_cortic collect duct_emap-28132_k2_1000187 probesets159Bruce Aronow
DevelopingKidney_e15.5_cortic collect duct_emap-28132_k2_20030 probesets26Bruce Aronow
DevelopingKidney_e15.5_cortic collect duct_emap-28132_k2_50095 probesets82Bruce Aronow
DevelopingKidney_e15.5_cortic collect duct_emap-28132_k3_10031 probesets28Bruce Aronow
DevelopingKidney_e15.5_cortic collect duct_emap-28132_k3_1000151 probesets132Bruce Aronow
DevelopingKidney_e15.5_cortic collect duct_emap-28132_k3_20060 probesets58Bruce Aronow
DevelopingKidney_e15.5_cortic collect duct_emap-28132_k3_50027 probesets24Bruce Aronow
DevelopingKidney_e15.5_cortic collect duct_emap-28132_k4_10018 probesets18Bruce Aronow
DevelopingKidney_e15.5_cortic collect duct_emap-28132_k4_1000442 probesets401Bruce Aronow
DevelopingKidney_e15.5_cortic collect duct_emap-28132_k4_20030 probesets24Bruce Aronow
DevelopingKidney_e15.5_cortic collect duct_emap-28132_k4_500191 probesets177Bruce Aronow
DevelopingKidney_e15.5_cortic collect duct_emap-28132_k5_10022 probesets19Bruce Aronow
DevelopingKidney_e15.5_cortic collect duct_emap-28132_k5_1000147 probesets126Bruce Aronow
DevelopingKidney_e15.5_cortic collect duct_emap-28132_k5_20010 probesets8Bruce Aronow
DevelopingKidney_e15.5_cortic collect duct_emap-28132_k5_500116 probesets97Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_100100 probesets88Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_10001000 probesets841Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_200200 probesets175Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_500500 probesets424Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k1_10014 probesets12Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k1_1000277 probesets235Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k1_20024 probesets23Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k1_50059 probesets53Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k2_10025 probesets23Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k2_1000123 probesets108Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k2_20038 probesets34Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k2_500113 probesets99Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k3_1008 probesets8Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k3_1000204 probesets179Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k3_20048 probesets45Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k3_500137 probesets126Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k4_10031 probesets25Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k4_1000307 probesets280Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k4_2008 probesets7Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k4_50029 probesets27Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k5_10022 probesets22Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k5_100089 probesets82Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k5_20082 probesets73Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k5_500162 probesets138Bruce Aronow
DevelopingKidney_e15.5_ureter tip_flank cortic collct_emap-27752_100100 probesets88Bruce Aronow
DevelopingKidney_e15.5_ureter tip_flank cortic collct_emap-27752_10001000 probesets863Bruce Aronow
DevelopingKidney_e15.5_ureter tip_flank cortic collct_emap-27752_200200 probesets172Bruce Aronow
DevelopingKidney_e15.5_ureter tip_flank cortic collct_emap-27752_500500 probesets433Bruce Aronow
DevelopingKidney_e15.5_ureter tip_flank cortic collct_emap-27752_k1_1009 probesets9Bruce Aronow
DevelopingKidney_e15.5_ureter tip_flank cortic collct_emap-27752_k1_1000170 probesets147Bruce Aronow
DevelopingKidney_e15.5_ureter tip_flank cortic collct_emap-27752_k1_20018 probesets16Bruce Aronow
DevelopingKidney_e15.5_ureter tip_flank cortic collct_emap-27752_k1_500143 probesets128Bruce Aronow
DevelopingKidney_e15.5_ureter tip_flank cortic collct_emap-27752_k2_10028 probesets23Bruce Aronow
DevelopingKidney_e15.5_ureter tip_flank cortic collct_emap-27752_k2_1000121 probesets114Bruce Aronow
DevelopingKidney_e15.5_ureter tip_flank cortic collct_emap-27752_k2_2007 probesets6Bruce Aronow
DevelopingKidney_e15.5_ureter tip_flank cortic collct_emap-27752_k2_50029 probesets25Bruce Aronow
DevelopingKidney_e15.5_ureter tip_flank cortic collct_emap-27752_k3_10023 probesets23Bruce Aronow
DevelopingKidney_e15.5_ureter tip_flank cortic collct_emap-27752_k3_100082 probesets70Bruce Aronow
DevelopingKidney_e15.5_ureter tip_flank cortic collct_emap-27752_k3_20042 probesets36Bruce Aronow
DevelopingKidney_e15.5_ureter tip_flank cortic collct_emap-27752_k3_50050 probesets44Bruce Aronow
DevelopingKidney_e15.5_ureter tip_flank cortic collct_emap-27752_k4_1009 probesets8Bruce Aronow
DevelopingKidney_e15.5_ureter tip_flank cortic collct_emap-27752_k4_1000229 probesets201Bruce Aronow
DevelopingKidney_e15.5_ureter tip_flank cortic collct_emap-27752_k4_20058 probesets55Bruce Aronow
DevelopingKidney_e15.5_ureter tip_flank cortic collct_emap-27752_k4_500105 probesets91Bruce Aronow
DevelopingKidney_e15.5_ureter tip_flank cortic collct_emap-27752_k5_10031 probesets29Bruce Aronow
DevelopingKidney_e15.5_ureter tip_flank cortic collct_emap-27752_k5_1000398 probesets370Bruce Aronow
DevelopingKidney_e15.5_ureter tip_flank cortic collct_emap-27752_k5_20075 probesets67Bruce Aronow
DevelopingKidney_e15.5_ureter tip_flank cortic collct_emap-27752_k5_500173 probesets165Bruce Aronow