Metanephros

Lower Urinary Tract

Early Genitourinary System

Male Reproductive System

Female Reproductive System

 

 

Tissue Summary: medullary collecting duct (TS22-TS28)


About

medullary collecting duct description

Segments of the collecting duct located in the medulla of the metanephros.



View medullary collecting duct in GUDMAP Development Tutorials


In Situ Data

Link to medullary collecting duct in-situ data for TS17 Link to medullary collecting duct in-situ data for TS18 Link to medullary collecting duct in-situ data for TS19 Link to medullary collecting duct in-situ data for TS20 Link to medullary collecting duct in-situ data for TS21 Link to medullary collecting duct in-situ data for TS22 Link to medullary collecting duct in-situ data for TS23 Link to medullary collecting duct in-situ data for TS24 Link to medullary collecting duct in-situ data for TS25 Link to medullary collecting duct in-situ data for TS26 Link to medullary collecting duct in-situ data for TS27 Link to medullary collecting duct in-situ data for TS28

Validated Anchor/Marker Genes

Anchors (5)

Anchor genes are defined as genes whose expression is restricted to one temporospatial anatomical compartment. These have been selected by microarray analyses followed by validation using section in-situ hybridisation.

Gene SymbolGene MGI IDAnchor OfStageAlso Marker ofGUDMAP IDReference
AI836003 MGI:2146066 medullary collecting duct (EMAPA:28061)
TS23GUDMAP:13573
Thiagarajan et al. (2011)
Clmn MGI:2136957 medullary collecting duct (EMAPA:28061)
TS23GUDMAP:13648
Thiagarajan et al. (2011)
Fam129a MGI:2137237 medullary collecting duct (EMAPA:28061)
TS23GUDMAP:11305
Thiagarajan et al. (2011)
Gsdmc4 MGI:1921798 medullary collecting duct (EMAPA:28061)
TS23GUDMAP:11309
Thiagarajan et al. (2011)
Upk3a MGI:98914 medullary collecting duct (EMAPA:28061)
TS23pelvic urothelial lining (EMAPA:28077)
GUDMAP:9904
Thiagarajan et al. (2011)

 

Markers (2)

Marker genes are defined as genes which display a regional or enriched expression pattern and may be useful in identifying one or more particular temporospatial compartment(s). These have been selected by microarray analyses followed by validation using section in-situ hybridisation.

Gene SymbolGene MGI IDMarker OfStageAlso Marker OfGUDMAP IDReference
Ppp1r3c MGI:1858229 medullary collecting duct (EMAPA:28061)
TS23cortical collecting duct (EMAPA:28130)
GUDMAP:11318
Thiagarajan et al. (2011)
Upk1b MGI:98912 medullary collecting duct (EMAPA:28061)
TS23GUDMAP:13577
Thiagarajan et al. (2011)

 

 

Genelists


Published Genelists

Published genelists from Microarray Analysis. Click on the number of probes to go to heatmap view


List NameDescription EntitiesGenesSubmitted ByRefs
UQ Medullary Collecting Duct E15.5Anchor genes specific to key renal compartments: Medullary Collecting Duct E15.516 probesets15Kylie Georgas, Rathi ThiagarajanThiagarajan et al. (2011)
Medullary Collecting Duct 15.5dpcBrunskill et al.: Ureteric Tip Region 15.5dpc411 probesets303Bruce Aronow, Eric BrunskillBrunskill et al. (2008)
K-means clustered - all from Brunskill et al. (2008)Brunskill et al.: All k-means clustered probesets7599 probesets4757Bruce Aronow, Eric BrunskillBrunskill et al. (2008)

 



Non-Published Genelists

Non-published genelists from Microarray Analysis. Click on the list name or number of probes to go to heatmap view. Microarray Analysis Help.


List NameDescription EntitiesGenesSubmitted ByRefs
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_100100 probesets88Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_10001000 probesets841Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_200200 probesets175Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_500500 probesets424Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k1_10014 probesets12Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k1_1000277 probesets235Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k1_20024 probesets23Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k1_50059 probesets53Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k2_10025 probesets23Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k2_1000123 probesets108Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k2_20038 probesets34Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k2_500113 probesets99Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k3_1008 probesets8Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k3_1000204 probesets179Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k3_20048 probesets45Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k3_500137 probesets126Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k4_10031 probesets25Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k4_1000307 probesets280Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k4_2008 probesets7Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k4_50029 probesets27Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k5_10022 probesets22Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k5_100089 probesets82Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k5_20082 probesets73Bruce Aronow
DevelopingKidney_e15.5_Medullary collecting duct_emap-28063_k5_500162 probesets138Bruce Aronow