Metanephros

Lower Urinary Tract

Early Genitourinary System

Male Reproductive System

Female Reproductive System

 

 

Tissue Summary: renal interstitium (TS20-TS28)


About

renal interstitium description

The renal interstitium, located between the nephrons, ureteric epithelia (ureteric tips, trunk and collecting duct system) and renal vasculature, is composed of renal support cells, including fibroblasts and macrophages, and mesenchymal stroma or interstitial cells. The renal vasculature lies within the renal interstitium but is not a part of it.



View renal interstitium in GUDMAP Development Tutorials


In Situ Data

Link to renal interstitium in-situ data for TS17 Link to renal interstitium in-situ data for TS18 Link to renal interstitium in-situ data for TS19 Link to renal interstitium in-situ data for TS20 Link to renal interstitium in-situ data for TS21 Link to renal interstitium in-situ data for TS22 Link to renal interstitium in-situ data for TS23 Link to renal interstitium in-situ data for TS24 Link to renal interstitium in-situ data for TS25 Link to renal interstitium in-situ data for TS26 Link to renal interstitium in-situ data for TS27 Link to renal interstitium in-situ data for TS28

Validated Anchor/Marker Genes

Anchors (0)

Anchor genes are defined as genes whose expression is restricted to one temporospatial anatomical compartment. These have been selected by microarray analyses followed by validation using section in-situ hybridisation.

Currently no defined anchor genes for this component

 

Markers (33)

Marker genes are defined as genes which display a regional or enriched expression pattern and may be useful in identifying one or more particular temporospatial compartment(s). These have been selected by microarray analyses followed by validation using section in-situ hybridisation.

Gene SymbolGene MGI IDMarker OfStageAlso Marker OfGUDMAP IDReference
Aff3 MGI:106927 renal interstitium group (EMAPA:28518)
TS23GUDMAP:9792
Thiagarajan et al. (2011)
Cdh11 MGI:99217 renal interstitium group (EMAPA:28518)
TS23cap mesenchyme (EMAPA:27621)
GUDMAP:8816
Thiagarajan et al. (2011)
Col23a1 MGI:2653243 renal interstitium group (EMAPA:28518)
TS23GUDMAP:10754
Thiagarajan et al. (2011)
Col3a1 MGI:88453 renal interstitium group (EMAPA:28518)
TS23GUDMAP:9892
Thiagarajan et al. (2011)
Col9a1 MGI:88465 renal interstitium group (EMAPA:28518)
TS23GUDMAP:7149
Thiagarajan et al. (2011)
Csrp1 MGI:88549 renal interstitium group (EMAPA:28518)
TS23cap mesenchyme (EMAPA:27621)
GUDMAP:10824
Thiagarajan et al. (2011)
Dact1 MGI:1891740 renal interstitium group (EMAPA:28518)
TS23cap mesenchyme (EMAPA:27621)
GUDMAP:20758
Thiagarajan et al. (2011)
Dnm3os MGI:3052332 renal interstitium group (EMAPA:28518)
TS23cap mesenchyme (EMAPA:27621)
GUDMAP:10816
Thiagarajan et al. (2011)
Dzip1 MGI:1914311 renal interstitium group (EMAPA:28518)
TS23GUDMAP:9796
Thiagarajan et al. (2011)
Emilin1 MGI:1926189 renal interstitium group (EMAPA:28518)
TS23GUDMAP:10835
Thiagarajan et al. (2011)
Gria4 MGI:95811 renal interstitium group (EMAPA:28518)
TS23GUDMAP:9902
Thiagarajan et al. (2011)
Gulp1 MGI:1920407 renal interstitium group (EMAPA:28518)
TS23GUDMAP:9780
Thiagarajan et al. (2011)
Hoxa10 MGI:96171 renal interstitium group (EMAPA:28518)
TS23cap mesenchyme (EMAPA:27621)
GUDMAP:9746
Thiagarajan et al. (2011)
Igf1 MGI:96432 renal interstitium group (EMAPA:28518)
TS23GUDMAP:10774
Thiagarajan et al. (2011)
Lgals1 MGI:96777 renal interstitium group (EMAPA:28518)
TS23GUDMAP:10789
Thiagarajan et al. (2011)
Lix1l MGI:3036267 renal interstitium group (EMAPA:28518)
TS23GUDMAP:9788
Thiagarajan et al. (2011)
Mfap4 MGI:1342276 renal interstitium group (EMAPA:28518)
TS23cap mesenchyme (EMAPA:27621)
GUDMAP:20763
Thiagarajan et al. (2011)
Mll5 MGI:1924825 renal interstitium group (EMAPA:28518)
TS23cap mesenchyme (EMAPA:27621)
GUDMAP:13933
Thiagarajan et al. (2011)
Mmrn1 MGI:1918195 renal interstitium group (EMAPA:28518)
TS23cap mesenchyme (EMAPA:27621)
GUDMAP:9754
Thiagarajan et al. (2011)
Ms4a6b MGI:1917024 renal interstitium group (EMAPA:28518)
TS23GUDMAP:10828
Thiagarajan et al. (2011)
Myl9 MGI:2138915 renal interstitium group (EMAPA:28518)
TS23GUDMAP:10793
Thiagarajan et al. (2011)
Nr2f2 MGI:1352452 renal interstitium group (EMAPA:28518)
TS23cap mesenchyme (EMAPA:27621)
GUDMAP:10820
Thiagarajan et al. (2011)
Olfml3 MGI:1914877 renal interstitium group (EMAPA:28518)
TS23GUDMAP:10797
Thiagarajan et al. (2011)
Pdgfra MGI:97530 renal interstitium group (EMAPA:28518)
TS23GUDMAP:9762
Thiagarajan et al. (2011)
Pid1 MGI:2138391 renal interstitium group (EMAPA:28518)
TS23GUDMAP:9898
Thiagarajan et al. (2011)
Prickle2 MGI:1925144 renal interstitium group (EMAPA:28518)
TS23GUDMAP:9776
Thiagarajan et al. (2011)
S1pr3 MGI:1339365 renal interstitium group (EMAPA:28518)
TS23GUDMAP:9900
Thiagarajan et al. (2011)
Synpo2 MGI:2153070 renal interstitium group (EMAPA:28518)
TS23GUDMAP:9750
Thiagarajan et al. (2011)
Tgfb1i1 MGI:102784 renal interstitium group (EMAPA:28518)
TS23GUDMAP:11320
Thiagarajan et al. (2011)
Tgfbi MGI:99959 renal interstitium group (EMAPA:28518)
TS23cap mesenchyme (EMAPA:27621)
GUDMAP:10760
Thiagarajan et al. (2011)
Tgm5 MGI:1921426 renal interstitium group (EMAPA:28518)
TS23GUDMAP:9896
Thiagarajan et al. (2011)
Tpm2 MGI:98810 renal interstitium group (EMAPA:28518)
TS23cap mesenchyme (EMAPA:27621)
GUDMAP:10800
Thiagarajan et al. (2011)
Tshz3 MGI:2442819 renal interstitium group (EMAPA:28518)
TS23GUDMAP:9894
Thiagarajan et al. (2011)

 

 

Genelists


Published Genelists

Published genelists from Microarray Analysis. Click on the number of probes to go to heatmap view


List NameDescription EntitiesGenesSubmitted ByRefs
Cortical Collecting Duct 15.5dpcBrunskill et al.: Cortical Collecting Duct 15.5dpc416 probesets90Bruce Aronow, Eric BrunskillBrunskill et al. (2008)
K-means clustered - all from Brunskill et al. (2008)Brunskill et al.: All k-means clustered probesets7599 probesets4757Bruce Aronow, Eric BrunskillBrunskill et al. (2008)
UQ Renal Cortical Interstitium E15.5Anchor genes specific to key renal compartments: Renal Cortical Interstitium E15.519 probesets15Kylie Georgas, Rathi ThiagarajanThiagarajan et al. (2011)
Cortical & Nephrogenic Interstitium 15.5dpcBrunskill et al.: Cortical & Nephrogenic Interstitium 15.5dpc473 probesets389Bruce Aronow, Eric BrunskillBrunskill et al. (2008)
UQ Renal Medullary Interstitium E15.5Anchor genes specific to key renal compartments: Renal Medullary Interstitium E15.549 probesets49Kylie Georgas, Rathi ThiagarajanThiagarajan et al. (2011)
Medullary Interstitum 15.5dpcBrunskill et al.: Medullary Interstitum 15.5dpc441 probesets323Bruce Aronow, Eric BrunskillBrunskill et al. (2008)

 



Non-Published Genelists

Non-published genelists from Microarray Analysis. Click on the list name or number of probes to go to heatmap view. Microarray Analysis Help.


List NameDescription EntitiesGenesSubmitted ByRefs
kidney_adult_Mesangium_Meis_100100 probesets94Bruce Aronow
kidney_adult_Mesangium_Meis_10001000 probesets943Bruce Aronow
kidney_adult_Mesangium_Meis_200200 probesets190Bruce Aronow
kidney_adult_Mesangium_Meis_500500 probesets475Bruce Aronow
kidney_adult_Mesangium_Meis_k1_1008 probesets6Bruce Aronow
kidney_adult_Mesangium_Meis_k1_1000138 probesets133Bruce Aronow
kidney_adult_Mesangium_Meis_k1_20061 probesets59Bruce Aronow
kidney_adult_Mesangium_Meis_k1_50056 probesets52Bruce Aronow
kidney_adult_Mesangium_Meis_k2_10020 probesets20Bruce Aronow
kidney_adult_Mesangium_Meis_k2_1000378 probesets363Bruce Aronow
kidney_adult_Mesangium_Meis_k2_20013 probesets12Bruce Aronow
kidney_adult_Mesangium_Meis_k2_50047 probesets43Bruce Aronow
kidney_adult_Mesangium_Meis_k3_1002 probesets2Bruce Aronow
kidney_adult_Mesangium_Meis_k3_100087 probesets83Bruce Aronow
kidney_adult_Mesangium_Meis_k3_20021 probesets19Bruce Aronow
kidney_adult_Mesangium_Meis_k3_500169 probesets164Bruce Aronow
kidney_adult_Mesangium_Meis_k4_10014 probesets12Bruce Aronow
kidney_adult_Mesangium_Meis_k4_1000315 probesets294Bruce Aronow
kidney_adult_Mesangium_Meis_k4_20015 probesets14Bruce Aronow
kidney_adult_Mesangium_Meis_k4_50044 probesets44Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_100100 probesets91Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_10001000 probesets876Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_200200 probesets178Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_500500 probesets450Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k1_10010 probesets9Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k1_1000152 probesets137Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k1_200103 probesets90Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k1_50045 probesets40Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k2_10018 probesets17Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k2_1000384 probesets327Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k2_20017 probesets15Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k2_50042 probesets40Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k3_10010 probesets9Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k3_1000115 probesets106Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k3_20046 probesets45Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k3_500128 probesets123Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k4_10010 probesets8Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k4_1000118 probesets104Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k4_20012 probesets11Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k4_500238 probesets209Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k5_10052 probesets48Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k5_1000231 probesets215Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k5_20022 probesets19Bruce Aronow
DevelopingKidney_e15.5_Pelvic Mesenchyme_emap-8241_k5_50047 probesets42Bruce Aronow
DevelopingKidney_e15.5_Peripheral blastema_emap-27731_100100 probesets92Bruce Aronow
DevelopingKidney_e15.5_Peripheral blastema_emap-27731_10001000 probesets856Bruce Aronow
DevelopingKidney_e15.5_Peripheral blastema_emap-27731_200200 probesets182Bruce Aronow
DevelopingKidney_e15.5_Peripheral blastema_emap-27731_500500 probesets441Bruce Aronow
DevelopingKidney_e15.5_Peripheral blastema_emap-27731_k1_10015 probesets14Bruce Aronow
DevelopingKidney_e15.5_Peripheral blastema_emap-27731_k1_1000242 probesets224Bruce Aronow
DevelopingKidney_e15.5_Peripheral blastema_emap-27731_k1_20031 probesets28Bruce Aronow
DevelopingKidney_e15.5_Peripheral blastema_emap-27731_k1_500102 probesets96Bruce Aronow
DevelopingKidney_e15.5_Peripheral blastema_emap-27731_k2_1003 probesets3Bruce Aronow
DevelopingKidney_e15.5_Peripheral blastema_emap-27731_k2_1000287 probesets240Bruce Aronow
DevelopingKidney_e15.5_Peripheral blastema_emap-27731_k2_200128 probesets120Bruce Aronow
DevelopingKidney_e15.5_Peripheral blastema_emap-27731_k2_500243 probesets211Bruce Aronow
DevelopingKidney_e15.5_Peripheral blastema_emap-27731_k3_10066 probesets62Bruce Aronow
DevelopingKidney_e15.5_Peripheral blastema_emap-27731_k3_1000345 probesets320Bruce Aronow
DevelopingKidney_e15.5_Peripheral blastema_emap-27731_k3_2008 probesets8Bruce Aronow
DevelopingKidney_e15.5_Peripheral blastema_emap-27731_k3_50093 probesets87Bruce Aronow
DevelopingKidney_e15.5_Peripheral blastema_emap-27731_k4_1009 probesets8Bruce Aronow
DevelopingKidney_e15.5_Peripheral blastema_emap-27731_k4_100032 probesets26Bruce Aronow
DevelopingKidney_e15.5_Peripheral blastema_emap-27731_k4_20018 probesets15Bruce Aronow
DevelopingKidney_e15.5_Peripheral blastema_emap-27731_k4_50040 probesets36Bruce Aronow
DevelopingKidney_e15.5_Peripheral blastema_emap-27731_k5_1007 probesets5Bruce Aronow
DevelopingKidney_e15.5_Peripheral blastema_emap-27731_k5_100094 probesets84Bruce Aronow
DevelopingKidney_e15.5_Peripheral blastema_emap-27731_k5_20015 probesets12Bruce Aronow
DevelopingKidney_e15.5_Peripheral blastema_emap-27731_k5_50022 probesets22Bruce Aronow