Metanephros

Lower Urinary Tract

Early Genitourinary System

Male Reproductive System

Female Reproductive System

 

 

Tissue Summary: cap mesenchyme (TS19-TS28)


About

cap mesenchyme description

Condensed mesenchymal cells located around the tips of the ureteric bud tree. A complex communication between the tip and these cells will induce the cap mesenchyme which begins nephrogenesis.



View cap mesenchyme in GUDMAP Development Tutorials


In Situ Data

Link to cap mesenchyme in-situ data for TS17 Link to cap mesenchyme in-situ data for TS18 Link to cap mesenchyme in-situ data for TS19 Link to cap mesenchyme in-situ data for TS20 Link to cap mesenchyme in-situ data for TS21 Link to cap mesenchyme in-situ data for TS22 Link to cap mesenchyme in-situ data for TS23 Link to cap mesenchyme in-situ data for TS24 Link to cap mesenchyme in-situ data for TS25 Link to cap mesenchyme in-situ data for TS26 Link to cap mesenchyme in-situ data for TS27 Link to cap mesenchyme in-situ data for TS28

Validated Anchor/Marker Genes

Anchors (0)

Anchor genes are defined as genes whose expression is restricted to one temporospatial anatomical compartment. These have been selected by microarray analyses followed by validation using section in-situ hybridisation.

Currently no defined anchor genes for this component

 

Markers (12)

Marker genes are defined as genes which display a regional or enriched expression pattern and may be useful in identifying one or more particular temporospatial compartment(s). These have been selected by microarray analyses followed by validation using section in-situ hybridisation.

Gene SymbolGene MGI IDMarker OfStageAlso Marker OfGUDMAP IDReference
Cdh11 MGI:99217 cap mesenchyme (EMAPA:27621)
TS23renal interstitium group (EMAPA:28518)
GUDMAP:8816
Thiagarajan et al. (2011)
Csrp1 MGI:88549 cap mesenchyme (EMAPA:27621)
TS23renal interstitium group (EMAPA:28518)
GUDMAP:10824
Thiagarajan et al. (2011)
Dact1 MGI:1891740 cap mesenchyme (EMAPA:27621)
TS23renal interstitium group (EMAPA:28518)
GUDMAP:20758
Thiagarajan et al. (2011)
Dnm3os MGI:3052332 cap mesenchyme (EMAPA:27621)
TS23renal interstitium group (EMAPA:28518)
GUDMAP:10816
Thiagarajan et al. (2011)
Eya1 MGI:109344 cap mesenchyme (EMAPA:27621)
TS23nephrogenic interstitium (EMAPA:17953)
GUDMAP:13805
Thiagarajan et al. (2011)
Hoxa10 MGI:96171 cap mesenchyme (EMAPA:27621)
TS23renal interstitium group (EMAPA:28518)
GUDMAP:9746
Thiagarajan et al. (2011)
Mfap4 MGI:1342276 cap mesenchyme (EMAPA:27621)
TS23renal interstitium group (EMAPA:28518)
GUDMAP:20763
Thiagarajan et al. (2011)
Mll5 MGI:1924825 cap mesenchyme (EMAPA:27621)
TS23renal interstitium group (EMAPA:28518)
GUDMAP:13933
Thiagarajan et al. (2011)
Mmrn1 MGI:1918195 cap mesenchyme (EMAPA:27621)
TS23renal interstitium group (EMAPA:28518)
GUDMAP:9754
Thiagarajan et al. (2011)
Nr2f2 MGI:1352452 cap mesenchyme (EMAPA:27621)
TS23renal interstitium group (EMAPA:28518)
GUDMAP:10820
Thiagarajan et al. (2011)
Tgfbi MGI:99959 cap mesenchyme (EMAPA:27621)
TS23renal interstitium group (EMAPA:28518)
GUDMAP:10760
Thiagarajan et al. (2011)
Tpm2 MGI:98810 cap mesenchyme (EMAPA:27621)
TS23renal interstitium group (EMAPA:28518)
GUDMAP:10800
Thiagarajan et al. (2011)

 

 

Genelists


Published Genelists

Published genelists from Microarray Analysis. Click on the number of probes to go to heatmap view


List NameDescription EntitiesGenesSubmitted ByRefs
UQ Cap Mesenchyme E15.5Anchor genes specific to key renal compartments: Cap Mesenchyme E15.532 probesets32Kylie Georgas, Rathi ThiagarajanThiagarajan et al. (2011)
Cap Mesenchyme 15.5dpcBrunskill et al.: Cap Mesenchyme 15.5dpc374 probesets277Bruce Aronow, Eric BrunskillBrunskill et al. (2008)
K-means clustered - all from Brunskill et al. (2008)Brunskill et al.: All k-means clustered probesets7599 probesets4757Bruce Aronow, Eric BrunskillBrunskill et al. (2008)

 



Non-Published Genelists

Non-published genelists from Microarray Analysis. Click on the list name or number of probes to go to heatmap view. Microarray Analysis Help.


List NameDescription EntitiesGenesSubmitted ByRefs
kidney_P0_CapMes_Crym_100100 probesets69Bruce Aronow
kidney_P0_CapMes_Crym_10001000 probesets749Bruce Aronow
kidney_P0_CapMes_Crym_200200 probesets131Bruce Aronow
kidney_P0_CapMes_Crym_500500 probesets338Bruce Aronow
kidney_P0_CapMes_Crym_k1_10037 probesets12Bruce Aronow
kidney_P0_CapMes_Crym_k1_1000115 probesets50Bruce Aronow
kidney_P0_CapMes_Crym_k1_20013 probesets13Bruce Aronow
kidney_P0_CapMes_Crym_k1_500132 probesets46Bruce Aronow
kidney_P0_CapMes_Crym_k2_10010 probesets4Bruce Aronow
kidney_P0_CapMes_Crym_k2_1000187 probesets93Bruce Aronow
kidney_P0_CapMes_Crym_k2_20051 probesets50Bruce Aronow
kidney_P0_CapMes_Crym_k2_500246 probesets213Bruce Aronow
kidney_P0_CapMes_Crym_k3_1003 probesets3Bruce Aronow
kidney_P0_CapMes_Crym_k3_100094 probesets85Bruce Aronow
kidney_P0_CapMes_Crym_k3_20048 probesets39Bruce Aronow
kidney_P0_CapMes_Crym_k3_50036 probesets35Bruce Aronow
kidney_P0_CapMes_Crym_k4_10010 probesets10Bruce Aronow
kidney_P0_CapMes_Crym_k4_100080 probesets74Bruce Aronow
kidney_P0_CapMes_Crym_k4_20080 probesets22Bruce Aronow
kidney_P0_CapMes_Crym_k4_50030 probesets25Bruce Aronow
kidney_P1_CapMes_Crym_100100 probesets69Bruce Aronow
kidney_P1_CapMes_Crym_10001000 probesets749Bruce Aronow
kidney_P1_CapMes_Crym_200200 probesets129Bruce Aronow
kidney_P1_CapMes_Crym_500500 probesets321Bruce Aronow
kidney_P1_CapMes_Crym_k1_1008 probesets8Bruce Aronow
kidney_P1_CapMes_Crym_k1_1000522 probesets448Bruce Aronow
kidney_P1_CapMes_Crym_k1_20014 probesets14Bruce Aronow
kidney_P1_CapMes_Crym_k1_50027 probesets22Bruce Aronow
kidney_P1_CapMes_Crym_k2_10040 probesets10Bruce Aronow
kidney_P1_CapMes_Crym_k2_1000127 probesets60Bruce Aronow
kidney_P1_CapMes_Crym_k2_20038 probesets38Bruce Aronow
kidney_P1_CapMes_Crym_k2_50064 probesets18Bruce Aronow
kidney_P1_CapMes_Crym_k3_1004 probesets4Bruce Aronow
kidney_P1_CapMes_Crym_k3_1000173 probesets81Bruce Aronow
kidney_P1_CapMes_Crym_k3_2003 probesets3Bruce Aronow
kidney_P1_CapMes_Crym_k3_50037 probesets36Bruce Aronow
kidney_P1_CapMes_Crym_k4_10046 probesets46Bruce Aronow
kidney_P1_CapMes_Crym_k4_100092 probesets85Bruce Aronow
kidney_P1_CapMes_Crym_k4_20064 probesets56Bruce Aronow
kidney_P1_CapMes_Crym_k4_500249 probesets211Bruce Aronow
kidney_P2_CapMes_Crym_100100 probesets91Bruce Aronow
kidney_P2_CapMes_Crym_10001000 probesets756Bruce Aronow
kidney_P2_CapMes_Crym_200200 probesets154Bruce Aronow
kidney_P2_CapMes_Crym_500500 probesets342Bruce Aronow
kidney_P2_CapMes_Crym_k1_1003 probesets3Bruce Aronow
kidney_P2_CapMes_Crym_k1_1000237 probesets212Bruce Aronow
kidney_P2_CapMes_Crym_k1_20017 probesets17Bruce Aronow
kidney_P2_CapMes_Crym_k1_50028 probesets24Bruce Aronow
kidney_P2_CapMes_Crym_k2_10011 probesets11Bruce Aronow
kidney_P2_CapMes_Crym_k2_1000187 probesets102Bruce Aronow
kidney_P2_CapMes_Crym_k2_2009 probesets6Bruce Aronow
kidney_P2_CapMes_Crym_k2_500106 probesets37Bruce Aronow
kidney_P2_CapMes_Crym_k3_1006 probesets6Bruce Aronow
kidney_P2_CapMes_Crym_k3_1000160 probesets71Bruce Aronow
kidney_P2_CapMes_Crym_k3_200109 probesets103Bruce Aronow
kidney_P2_CapMes_Crym_k3_500240 probesets217Bruce Aronow
kidney_P2_CapMes_Crym_k4_10029 probesets29Bruce Aronow
kidney_P2_CapMes_Crym_k4_1000103 probesets91Bruce Aronow
kidney_P2_CapMes_Crym_k4_20053 probesets21Bruce Aronow
kidney_P2_CapMes_Crym_k4_50039 probesets37Bruce Aronow
kidney_P3_CapMes_Crym_100100 probesets95Bruce Aronow
kidney_P3_CapMes_Crym_10001000 probesets860Bruce Aronow
kidney_P3_CapMes_Crym_200200 probesets185Bruce Aronow
kidney_P3_CapMes_Crym_500500 probesets424Bruce Aronow
kidney_P3_CapMes_Crym_k1_10037 probesets36Bruce Aronow
kidney_P3_CapMes_Crym_k1_1000299 probesets257Bruce Aronow
kidney_P3_CapMes_Crym_k1_20014 probesets6Bruce Aronow
kidney_P3_CapMes_Crym_k1_50061 probesets29Bruce Aronow
kidney_P3_CapMes_Crym_k2_10038 probesets35Bruce Aronow
kidney_P3_CapMes_Crym_k2_1000129 probesets123Bruce Aronow
kidney_P3_CapMes_Crym_k2_20023 probesets23Bruce Aronow
kidney_P3_CapMes_Crym_k2_500180 probesets167Bruce Aronow
kidney_P3_CapMes_Crym_k3_1005 probesets5Bruce Aronow
kidney_P3_CapMes_Crym_k3_1000112 probesets65Bruce Aronow
kidney_P3_CapMes_Crym_k3_20023 probesets21Bruce Aronow
kidney_P3_CapMes_Crym_k3_500152 probesets129Bruce Aronow
kidney_P3_CapMes_Crym_k4_10010 probesets10Bruce Aronow
kidney_P3_CapMes_Crym_k4_1000379 probesets348Bruce Aronow
kidney_P3_CapMes_Crym_k4_20073 probesets70Bruce Aronow
kidney_P3_CapMes_Crym_k4_50059 probesets58Bruce Aronow
kidney_P4_CapMesRenVes_Crym_100100 probesets97Bruce Aronow
kidney_P4_CapMesRenVes_Crym_10001000 probesets885Bruce Aronow
kidney_P4_CapMesRenVes_Crym_200200 probesets189Bruce Aronow
kidney_P4_CapMesRenVes_Crym_500500 probesets442Bruce Aronow
kidney_P4_CapMesRenVes_Crym_k1_10017 probesets17Bruce Aronow
kidney_P4_CapMesRenVes_Crym_k1_100076 probesets71Bruce Aronow
kidney_P4_CapMesRenVes_Crym_k1_20055 probesets50Bruce Aronow
kidney_P4_CapMesRenVes_Crym_k1_50072 probesets69Bruce Aronow
kidney_P4_CapMesRenVes_Crym_k2_10011 probesets9Bruce Aronow
kidney_P4_CapMesRenVes_Crym_k2_100091 probesets61Bruce Aronow
kidney_P4_CapMesRenVes_Crym_k2_20023 probesets23Bruce Aronow
kidney_P4_CapMesRenVes_Crym_k2_50090 probesets82Bruce Aronow
kidney_P4_CapMesRenVes_Crym_k3_10026 probesets26Bruce Aronow
kidney_P4_CapMesRenVes_Crym_k3_1000168 probesets156Bruce Aronow
kidney_P4_CapMesRenVes_Crym_k3_20064 probesets64Bruce Aronow
kidney_P4_CapMesRenVes_Crym_k3_500187 probesets171Bruce Aronow
kidney_P4_CapMesRenVes_Crym_k4_10012 probesets12Bruce Aronow
kidney_P4_CapMesRenVes_Crym_k4_1000127 probesets123Bruce Aronow
kidney_P4_CapMesRenVes_Crym_k4_20019 probesets19Bruce Aronow
kidney_P4_CapMesRenVes_Crym_k4_500113 probesets103Bruce Aronow
DevelopingKidney_e15.5_Cap mesenchyme_emap-27738_100100 probesets86Bruce Aronow
DevelopingKidney_e15.5_Cap mesenchyme_emap-27738_10001000 probesets835Bruce Aronow
DevelopingKidney_e15.5_Cap mesenchyme_emap-27738_200200 probesets173Bruce Aronow
DevelopingKidney_e15.5_Cap mesenchyme_emap-27738_500500 probesets428Bruce Aronow
DevelopingKidney_e15.5_Cap mesenchyme_emap-27738_k1_10013 probesets12Bruce Aronow
DevelopingKidney_e15.5_Cap mesenchyme_emap-27738_k1_1000275 probesets254Bruce Aronow
DevelopingKidney_e15.5_Cap mesenchyme_emap-27738_k1_20022 probesets22Bruce Aronow
DevelopingKidney_e15.5_Cap mesenchyme_emap-27738_k1_50055 probesets52Bruce Aronow
DevelopingKidney_e15.5_Cap mesenchyme_emap-27738_k2_10041 probesets35Bruce Aronow
DevelopingKidney_e15.5_Cap mesenchyme_emap-27738_k2_1000131 probesets122Bruce Aronow
DevelopingKidney_e15.5_Cap mesenchyme_emap-27738_k2_20086 probesets71Bruce Aronow
DevelopingKidney_e15.5_Cap mesenchyme_emap-27738_k2_500206 probesets175Bruce Aronow
DevelopingKidney_e15.5_Cap mesenchyme_emap-27738_k3_10029 probesets25Bruce Aronow
DevelopingKidney_e15.5_Cap mesenchyme_emap-27738_k3_1000223 probesets200Bruce Aronow
DevelopingKidney_e15.5_Cap mesenchyme_emap-27738_k3_20039 probesets36Bruce Aronow
DevelopingKidney_e15.5_Cap mesenchyme_emap-27738_k3_50073 probesets66Bruce Aronow
DevelopingKidney_e15.5_Cap mesenchyme_emap-27738_k4_1006 probesets5Bruce Aronow
DevelopingKidney_e15.5_Cap mesenchyme_emap-27738_k4_1000207 probesets174Bruce Aronow
DevelopingKidney_e15.5_Cap mesenchyme_emap-27738_k4_20034 probesets32Bruce Aronow
DevelopingKidney_e15.5_Cap mesenchyme_emap-27738_k4_50084 probesets78Bruce Aronow
DevelopingKidney_e15.5_Cap mesenchyme_emap-27738_k5_10011 probesets11Bruce Aronow
DevelopingKidney_e15.5_Cap mesenchyme_emap-27738_k5_1000164 probesets155Bruce Aronow
DevelopingKidney_e15.5_Cap mesenchyme_emap-27738_k5_20019 probesets18Bruce Aronow
DevelopingKidney_e15.5_Cap mesenchyme_emap-27738_k5_50082 probesets80Bruce Aronow