Metanephros

Lower Urinary Tract

Early Genitourinary System

Male Reproductive System

Female Reproductive System

 

 

Tissue Summary: metanephric mesenchyme (TS17-TS19)


About

metanephric mesenchyme description

The metanephric mesenchyme is located dorsal and immediately adjacent to the caudal end of the nephric (or Wolffian) duct. During development, through the process of nephrogenesis, this mesenchyme will give rise to the nephrons of the metanephros.



View metanephric mesenchyme in GUDMAP Development Tutorials


In Situ Data

Link to metanephric mesenchyme in-situ data for TS17 Link to metanephric mesenchyme in-situ data for TS18 Link to metanephric mesenchyme in-situ data for TS19 Link to metanephric mesenchyme in-situ data for TS20 Link to metanephric mesenchyme in-situ data for TS21 Link to metanephric mesenchyme in-situ data for TS22 Link to metanephric mesenchyme in-situ data for TS23 Link to metanephric mesenchyme in-situ data for TS24 Link to metanephric mesenchyme in-situ data for TS25 Link to metanephric mesenchyme in-situ data for TS26 Link to metanephric mesenchyme in-situ data for TS27 Link to metanephric mesenchyme in-situ data for TS28

Validated Anchor/Marker Genes

Anchors (0)

Anchor genes are defined as genes whose expression is restricted to one temporospatial anatomical compartment. These have been selected by microarray analyses followed by validation using section in-situ hybridisation.

Currently no defined anchor genes for this component

 

Markers (12)

Marker genes are defined as genes which display a regional or enriched expression pattern and may be useful in identifying one or more particular temporospatial compartment(s). These have been selected by microarray analyses followed by validation using section in-situ hybridisation.

Gene SymbolGene MGI IDMarker OfStageAlso Marker OfGUDMAP IDReference
Cdh11 MGI:99217 cap mesenchyme (EMAPA:27621)
TS23renal interstitium group (EMAPA:28518)
GUDMAP:8816
Thiagarajan et al. (2011)
Csrp1 MGI:88549 cap mesenchyme (EMAPA:27621)
TS23renal interstitium group (EMAPA:28518)
GUDMAP:10824
Thiagarajan et al. (2011)
Dact1 MGI:1891740 cap mesenchyme (EMAPA:27621)
TS23renal interstitium group (EMAPA:28518)
GUDMAP:20758
Thiagarajan et al. (2011)
Dnm3os MGI:3052332 cap mesenchyme (EMAPA:27621)
TS23renal interstitium group (EMAPA:28518)
GUDMAP:10816
Thiagarajan et al. (2011)
Eya1 MGI:109344 cap mesenchyme (EMAPA:27621)
TS23nephrogenic interstitium (EMAPA:17953)
GUDMAP:13805
Thiagarajan et al. (2011)
Hoxa10 MGI:96171 cap mesenchyme (EMAPA:27621)
TS23renal interstitium group (EMAPA:28518)
GUDMAP:9746
Thiagarajan et al. (2011)
Mfap4 MGI:1342276 cap mesenchyme (EMAPA:27621)
TS23renal interstitium group (EMAPA:28518)
GUDMAP:20763
Thiagarajan et al. (2011)
Mll5 MGI:1924825 cap mesenchyme (EMAPA:27621)
TS23renal interstitium group (EMAPA:28518)
GUDMAP:13933
Thiagarajan et al. (2011)
Mmrn1 MGI:1918195 cap mesenchyme (EMAPA:27621)
TS23renal interstitium group (EMAPA:28518)
GUDMAP:9754
Thiagarajan et al. (2011)
Nr2f2 MGI:1352452 cap mesenchyme (EMAPA:27621)
TS23renal interstitium group (EMAPA:28518)
GUDMAP:10820
Thiagarajan et al. (2011)
Tgfbi MGI:99959 cap mesenchyme (EMAPA:27621)
TS23renal interstitium group (EMAPA:28518)
GUDMAP:10760
Thiagarajan et al. (2011)
Tpm2 MGI:98810 cap mesenchyme (EMAPA:27621)
TS23renal interstitium group (EMAPA:28518)
GUDMAP:10800
Thiagarajan et al. (2011)

 

 

Genelists


Published Genelists

Published genelists from Microarray Analysis. Click on the number of probes to go to heatmap view


List NameDescription EntitiesGenesSubmitted ByRefs
Metanephric Mesenchyme 11.5dpcBrunskill et al.: Metanephric Mesenchyme 11.5dpc378 probesets301Bruce Aronow, Eric BrunskillBrunskill et al. (2008)
K-means clustered - all from Brunskill et al. (2008)Brunskill et al.: All k-means clustered probesets7599 probesets4757Bruce Aronow, Eric BrunskillBrunskill et al. (2008)

 



Non-Published Genelists

Non-published genelists from Microarray Analysis. Click on the list name or number of probes to go to heatmap view. Microarray Analysis Help.


List NameDescription EntitiesGenesSubmitted ByRefs
JGA single cell_e11.5_MetanephMesench_Scamp_100100 probesets88Bruce Aronow
JGA single cell_e11.5_MetanephMesench_Scamp_10001000 probesets869Bruce Aronow
JGA single cell_e11.5_MetanephMesench_Scamp_200200 probesets177Bruce Aronow
JGA single cell_e11.5_MetanephMesench_Scamp_500500 probesets430Bruce Aronow
JGA single cell_e11.5_MetanephMesench_Scamp_k1_10030 probesets30Bruce Aronow
JGA single cell_e11.5_MetanephMesench_Scamp_k1_1000238 probesets211Bruce Aronow
JGA single cell_e11.5_MetanephMesench_Scamp_k1_20036 probesets36Bruce Aronow
JGA single cell_e11.5_MetanephMesench_Scamp_k1_50036 probesets28Bruce Aronow
JGA single cell_e11.5_MetanephMesench_Scamp_k2_10022 probesets18Bruce Aronow
JGA single cell_e11.5_MetanephMesench_Scamp_k2_1000230 probesets198Bruce Aronow
JGA single cell_e11.5_MetanephMesench_Scamp_k2_20044 probesets43Bruce Aronow
JGA single cell_e11.5_MetanephMesench_Scamp_k2_500102 probesets95Bruce Aronow
JGA single cell_e11.5_MetanephMesench_Scamp_k3_10019 probesets11Bruce Aronow
JGA single cell_e11.5_MetanephMesench_Scamp_k3_1000230 probesets209Bruce Aronow
JGA single cell_e11.5_MetanephMesench_Scamp_k3_20037 probesets24Bruce Aronow
JGA single cell_e11.5_MetanephMesench_Scamp_k3_500153 probesets134Bruce Aronow
JGA single cell_e11.5_MetanephMesench_Scamp_k4_10018 probesets18Bruce Aronow
JGA single cell_e11.5_MetanephMesench_Scamp_k4_1000174 probesets159Bruce Aronow
JGA single cell_e11.5_MetanephMesench_Scamp_k4_20038 probesets34Bruce Aronow
JGA single cell_e11.5_MetanephMesench_Scamp_k4_500137 probesets123Bruce Aronow
DevelopingKidney_e11.5_metaneph mesench_emap-3843_100100 probesets91Bruce Aronow
DevelopingKidney_e11.5_metaneph mesench_emap-3843_10001000 probesets905Bruce Aronow
DevelopingKidney_e11.5_metaneph mesench_emap-3843_200200 probesets176Bruce Aronow
DevelopingKidney_e11.5_metaneph mesench_emap-3843_500500 probesets458Bruce Aronow
DevelopingKidney_e11.5_metaneph mesench_emap-3843_k1_10015 probesets15Bruce Aronow
DevelopingKidney_e11.5_metaneph mesench_emap-3843_k1_1000156 probesets146Bruce Aronow
DevelopingKidney_e11.5_metaneph mesench_emap-3843_k1_20060 probesets58Bruce Aronow
DevelopingKidney_e11.5_metaneph mesench_emap-3843_k1_50070 probesets61Bruce Aronow
DevelopingKidney_e11.5_metaneph mesench_emap-3843_k2_10030 probesets28Bruce Aronow
DevelopingKidney_e11.5_metaneph mesench_emap-3843_k2_1000108 probesets96Bruce Aronow
DevelopingKidney_e11.5_metaneph mesench_emap-3843_k2_20042 probesets37Bruce Aronow
DevelopingKidney_e11.5_metaneph mesench_emap-3843_k2_50087 probesets80Bruce Aronow
DevelopingKidney_e11.5_metaneph mesench_emap-3843_k3_10013 probesets12Bruce Aronow
DevelopingKidney_e11.5_metaneph mesench_emap-3843_k3_1000417 probesets399Bruce Aronow
DevelopingKidney_e11.5_metaneph mesench_emap-3843_k3_20022 probesets21Bruce Aronow
DevelopingKidney_e11.5_metaneph mesench_emap-3843_k3_500120 probesets116Bruce Aronow
DevelopingKidney_e11.5_metaneph mesench_emap-3843_k4_10026 probesets25Bruce Aronow
DevelopingKidney_e11.5_metaneph mesench_emap-3843_k4_1000179 probesets170Bruce Aronow
DevelopingKidney_e11.5_metaneph mesench_emap-3843_k4_20049 probesets46Bruce Aronow
DevelopingKidney_e11.5_metaneph mesench_emap-3843_k4_50076 probesets73Bruce Aronow
DevelopingKidney_e11.5_metaneph mesench_emap-3843_k5_10016 probesets13Bruce Aronow
DevelopingKidney_e11.5_metaneph mesench_emap-3843_k5_1000140 probesets124Bruce Aronow
DevelopingKidney_e11.5_metaneph mesench_emap-3843_k5_20027 probesets20Bruce Aronow
DevelopingKidney_e11.5_metaneph mesench_emap-3843_k5_500147 probesets141Bruce Aronow